Projects
Analytical Spherical Polar Fourier Imaging
In diffusion MRI field, Ensemble Average Propagator (EAP) has full information about the diffusion process which reflects the complex tissue micro-structure.
Its radial integral, named Orientation Distribution Function (ODF), is the probability density function that is used to describe the probability of the fiber direction.
They both play very important roles in dMRI data process.
How to analytically and robustly estimate EAP and ODF are at the heart of dMRI research.
Diffusion Spectrum Imaging (DSI) is the classical method to estimate EAP via Numerical Fourier Transform.
Once EAP is estimated, ODF could be approximated via numerical integral.
However DSI needs a lot of samplings and very large b values.
Many papers proposed how to estimate EAP and ODF from single shell HARDI data with some unreal assumptions.
Recently several methods based on mono-exponential decay assumption (MEDA) were proposed for single shell data.
Although MEDA has been extended to multi-exponential model so that it can reduce the modeling error and work for the data
from multiple shells, it is impractical because a nonlinear fitting is needed
for every direction, suffering from limited samples, local minima, computational
complexity.
Recently Spherical Polar Fourier Imaging (SPFI) was proposed to estimate some EAP features from multiple shell data without
any assumption.
However, the original SPFI proposed by Dr. Assemlal was a numerical solution using Parseval's theorem.
It could be called as nSPFI.
Here we present a novel analytical solution for SPFI. We call it aSPFI.
In aSPFI, we propose two linear transformations.
One is from the q-space signal to the EAP profile.
The other one is from the q-space signal to the ODF.
They are analytical and linear, which makes them extremely fast.
aSPFI naturally combines the DWI signals with different b-values.
It works well especially for the data with low SNR, low anisotropy, and non-exponential decay.
Publications on this topic include:
Jian Cheng, Tianzi Jiang, Rachid Deriche,
"Theoretical Analysis and Practical Insights on EAP Estimation via a Unified HARDI Framework",
Computational Diffusion MRI workshop (CDMRI'11), in conjunction with the MICCAI'11, Toronto, September 18-22, 2011.
[PDF] (Oral)
Jian Cheng, Sylvain Merlet, Aurobrata Ghosh, Emmanuel Caruyer, Tianzi Jiang, Rachid Deriche,
"Compressive Sensing Ensemble Average Propagator Estimation via L1 Spherical Polar Fourier Imaging",
Computational Diffusion MRI workshop (CDMRI'11), in conjunction with the MICCAI'11, Toronto, September 18-22, 2011.
[PDF] (Oral)
Emmanuel Caruyer, Jian Cheng, Christophe Lenglet, Guillermo Sapiro, Tianzi Jiang, Rachid Deriche,
"Optimal Design of Multiple Q-shells experiments for Diffusion MRI",
Computational Diffusion MRI workshop (CDMRI'11), in conjunction with the MICCAI'11, Toronto, September 18-22, 2011.
[PDF] (Oral)
Sylvain Merlet, Jian Cheng, Aurobrata Ghosh, Rachid Deriche,
"Spherical Polar Fourier EAP and ODF Reconstruction via Compressed Sensing in Diffusion MRI",
2011 IEEE International Symposium on Biomedical Imaging: From Nano to Macro (ISBI'11), Chicago, United States, March 30 - April 2, 2011.
[PDF]
Jian Cheng, Aurobrata Ghosh, Tianzi Jiang, Rachid Deriche,
"Model-free and Analytical EAP Reconstruction via Spherical Polar Fourier Diffusion MRI",
13th International Conference on Medical Image Computing and Computer Assisted Intervention (MICCAI'10), Beijing, September 20-24, 2010.
[PDF]
Jian Cheng, Aurobrata Ghosh, Rachid Deriche, Tianzi Jiang,
"Model-Free, Regularized, Fast, and Robust Analytical Orientation Distribution Function Estimation",
13th International Conference on Medical Image Computing and Computer Assisted Intervention (MICCAI'10), Beijing, September 20-24, 2010.
[PDF]